Description Usage Arguments Details Value Author(s)
Differential expression
1 2 |
scd |
Single cell data set object |
group1 |
Names of cells in group 1 |
group2 |
Names of cells in group 2 |
thr |
Default 1e-4. False discovery rate threshold |
sdFilter |
Default TRUE. Remove genes with zero standard deviation |
colSideCols |
Which column to use for addtional column side colors for heatmap. |
cscCols |
Colours to use for the different levels |
minCounts |
Only include genes with more than this number of counts over all the cells used in DE. |
Identify differentially expressed genes using Wilcoxon Rank sum test
Returns a list object
Wajid Jawaid
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