clustLouvain: Perform Louvain clustering
In wjawaid/bglab: Berthold Gottgens lab scRNA seq
Description
Usage
Arguments
Details
Value
Author(s)
Description
Perform Louvain clustering
Usage
1
2
clustLouvain(scd, pcaDims = 50, nsig = 20, dist = NULL, plotDims = 3,
layoutIter = 1000)
Arguments
scd
Single Cell Dataset object
pcaDims
Number of dimensions to use
nsig
knn for automatic sigma calculation
dist
Provide distance matrix to speed up clustering
plotDims
Number of dimensions to use on Fruchter-Reingold layout
of graph.
layoutIter
Number of iterstions to run Fruchterman-Reingold graph
Details
Perform Louvain clustering
Value
List
Author(s)
Wajid Jawaid
wjawaid/bglab documentation built on May 4, 2019, 6:33 a.m.
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Description Usage Arguments Details Value Author(s)
Description
Perform Louvain clustering
Usage
1 2 | clustLouvain(scd, pcaDims = 50, nsig = 20, dist = NULL, plotDims = 3,
layoutIter = 1000)
|
Arguments
scd |
Single Cell Dataset object |
pcaDims |
Number of dimensions to use |
nsig |
knn for automatic sigma calculation |
dist |
Provide distance matrix to speed up clustering |
plotDims |
Number of dimensions to use on Fruchter-Reingold layout of graph. |
layoutIter |
Number of iterstions to run Fruchterman-Reingold graph |
Details
Perform Louvain clustering
Value
List
Author(s)
Wajid Jawaid
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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