Description Usage Arguments Details Value Author(s)
Differential expression using DESeq2
1 2 |
scd |
SCD |
group1 |
First group. Query group. |
group2 |
Second group. Reference group. |
fdr |
FDR |
gene |
Vector of genes (ENSEMBL ids) to use for DE. |
rmPattern |
Remove these genes |
minCounts |
Remove genes with raw counts less than this |
nMinCells |
The minimum number of cells that must have the gene expressed (more than 0 counts) for the gene to be included for differential expression. |
Differential expression using DESeq2
List.
Wajid Jawaid
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