API for wjawaid/bglab
Berthold Gottgens lab scRNA seq

Global functions
DiffusionMap-class Man page
Isomap-class Man page
PCA-class Man page
SCD-class Man page
TSNE-class Man page
addPath Man page
addPath,SCD-method Man page
addPath,reducedDim-method Man page
addPheno Man page
addPheno,SCD-method Man page
applyGaussianKernelwithVariableSigma Man page Source code
applyMVP Man page Source code
bglab Man page
clipboard Man page Source code
clustLouvain Man page Source code
colorGradient Man page Source code
counts,SCD-method Man page
deactivateFilters Source code
diffuse Man page
diffuse,SCD-method Man page
diffuseMat Man page Source code
diffuseMat2 Man page Source code
diffuseProj Man page Source code
dim,SCD-method Man page
doDE Man page Source code
doDESeq Man page Source code
eigenvals Man page
eigenvals,DiffusionMap-method Man page
eigenvals,reducedDim-method Man page
eigenvecs Man page
eigenvecs,DiffusionMap-method Man page
eigenvecs,reducedDim-method Man page
enrichr Man page Source code
estSizeFact Man page Source code
estSizeFact2 Man page Source code
excludeCells Man page
excludeCells,SCD-method Man page
exportToMatlab Man page Source code
expressedGene Man page Source code
exprs,SCD-method Man page
fData,SCD-method Man page
facsPlot Man page Source code
fastDist Man page Source code
filterCell Man page
filterCell,SCD-method Man page
filterCell<- Man page
filterCell<-,SCD,logical-method Man page
filterGene Man page
filterGene,SCD-method Man page
filterGene<- Man page
filterGene<-,SCD,logical-method Man page
filterQC Man page
filterQC,SCD-method Man page
filterQC<- Man page
filterQC<-,SCD,logical-method Man page
findCells Man page Source code
findGene Man page Source code
findLouvain Man page Source code
findPath Man page
findPath,SCD-method Man page
geneDistribution Man page Source code
geneID2Name Man page Source code
geneName2id Man page Source code
getDiffMap Man page
getDiffMap,SCD-method Man page
getIsomap Man page
getIsomap,SCD-method Man page
getMST Man page
getMST,SCD-method Man page
getMST,reducedDim-method Man page
getMVP Man page Source code
getPCA Man page
getPCA,SCD-method Man page
getPaths Man page
getPaths,reducedDim-method Man page
getTSNE Man page
getTSNE,SCD-method Man page
ggCol Man page Source code
heatmap.gottgens Man page Source code
heatmap.minus Man page Source code
initialize,SCD-method Man page
listEnrichrDbs Man page Source code
loadings,PCA-method Man page
logVarGenes Man page Source code
markFailedQC Man page
markFailedQC,SCD-method Man page
markGOI Man page Source code
memls Man page Source code
mst Man page
mst,SCD-method Man page
mst,reducedDim-method Man page
multiGenes Man page Source code
neatLabels Man page Source code
newSCD Man page Source code
orderFrame Man page Source code
pData,SCD-method Man page
performQC Man page
performQC,SCD-method Man page
plot,SCD,ANY-method Man page
plot3 Man page
plot3,reducedDim-method Man page
plotGene Man page Source code
plotGeneProfile Man page Source code
plotLegend Man page Source code
plotPath3 Man page
plotPath3,reducedDim-method Man page
plotQC Man page Source code
plotTechVar Man page Source code
plotTree3 Man page
prepData Man page Source code
printEnrich Man page Source code
printGene Man page Source code
qc Man page
qc,SCD-method Man page
qcFunc Man page Source code
read.qPCR Man page Source code
reducedDim-class Man page
removePath Man page
removePath,SCD-method Man page
removePath,reducedDim-method Man page
resetCells Man page Source code
restoreFilters Source code
runPCA Man page
runPCA,SCD-method Man page
runTSNE Man page
runTSNE,SCD-method Man page
saveFilters Source code
selectCells Man page
selectCells,SCD-method Man page
selectVariableGenes Man page
selectVariableGenes,SCD-method Man page
selectionTray Man page Source code
sf Man page
sf,SCD-method Man page
sf<- Man page
sf<-,SCD,character,matrix-method Man page
slidingAv Man page Source code
smoothGn Man page Source code
sparseMarkov Man page Source code
spikes Man page
spikes,SCD-method Man page
submap Man page Source code
subsetData Source code
techVar Man page
techVar,SCD-method Man page
techVarSub Man page Source code
useFilter Man page
useFilter,SCD-method Man page
useFilter<- Man page
useFilter<-,SCD,logical-method Man page
winsor Man page Source code
writeGeneList Man page Source code
wjawaid/bglab documentation built on May 28, 2017, 4:35 a.m.