multiGenes: Generates multiple 3D plots with marked gene expression
In wjawaid/bglab: Berthold Gottgens lab scRNA seq

Description Usage Arguments Details Value Author(s)

Generates multiple 3D plots with marked gene expression

multiGenes(scd, reduceMethod, geneVect, nr, nc, res = c(1439, 893),
  useDims = 1:3, height = 7, width = 7, mar = c(0, 0, 3.1, 0),
  pdf.name = NULL, includeFiltered = FALSE, vp = NULL, arrange = TRUE,
  project2D = NULL, layoutMat = NULL, legend = FALSE, ...)

`scd`	Single cell dataset
`reduceMethod`	dimensionality reduction method to be plotted
`geneVect`	character vector of gene names
`nr`	Number of rows on scree
`nc`	Number of columns on screen
`res`	Default 1439 x 893. Resolution of graphics device. CIMR 3200x1024
`useDims`	Dimensions to be plotted
`height`	height of display windows. Deafaults to 7.
`width`	width of display window. Defaults to 7.
`mar`	Plot margins. Defaults to c(0,0,3.1,0).
`pdf.name`	To output to pdf file. Provide name of file. Defaults to NULL
`includeFiltered`	Defaults to FALSE. To include filtered values.
`vp`	Default NULL. Pass par() or par3d() options to set desired viewpoint. Particularly useful when generating pdf(s).
`arrange`	Default TRUE. To arrange the windows
`project2D`	Default NULL. Projects 3D graph into 2D by the given transformation matrix. This matrix must have been produced using `getMVP` on an open rgl device.
`layoutMat`	Default NULL. Provides greater control of the layout matrix.
`legend`	Default FALSE. To plot legend or not.
`...`	Parameters to pass to plotGene.