Files in wjawaid/bglab
Berthold Gottgens lab scRNA seq
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/bglab.R
R/class_defs.R
R/functions.R
R/generics.R
R/heatmap.R
R/methods.R
R/sysdata.rda
README.Rmd
README.md
bglab.Rproj
man/DiffusionMap-class.Rd
man/Isomap-class.Rd
man/PCA-class.Rd
man/SCD-class.Rd
man/TSNE-class.Rd
man/addPath-SCD-method.Rd
man/addPath-reducedDim-method.Rd
man/addPath.Rd
man/addPheno-SCD-method.Rd
man/addPheno.Rd
man/applyGaussianKernelwithVariableSigma.Rd
man/applyMVP.Rd
man/bglab.Rd
man/clipboard.Rd
man/clustLouvain.Rd
man/colorGradient.Rd
man/counts-SCD-method.Rd
man/diffuse-SCD-method.Rd
man/diffuse.Rd
man/diffuseMat.Rd
man/diffuseMat2.Rd
man/diffuseProj.Rd
man/dim-SCD-method.Rd
man/doDE.Rd
man/doDESeq.Rd
man/eigenvals-DiffusionMap-method.Rd
man/eigenvals-reducedDim-method.Rd
man/eigenvals.Rd
man/eigenvecs-DiffusionMap-method.Rd
man/eigenvecs-reducedDim-method.Rd
man/eigenvecs.Rd
man/enrichr.Rd
man/estSizeFact.Rd
man/estSizeFact2.Rd
man/excludeCells-SCD-method.Rd
man/excludeCells.Rd
man/exportToMatlab.Rd
man/expressedGene.Rd
man/exprs-SCD-method.Rd
man/fData-SCD-method.Rd
man/facsPlot.Rd
man/fastDist.Rd
man/filterCell-SCD-method.Rd
man/filterCell-set-SCD-logical-method.Rd
man/filterCell-set.Rd
man/filterCell.Rd
man/filterGene-SCD-method.Rd
man/filterGene-set-SCD-logical-method.Rd
man/filterGene-set.Rd
man/filterGene.Rd
man/filterQC-SCD-method.Rd
man/filterQC-set-SCD-logical-method.Rd
man/filterQC-set.Rd
man/filterQC.Rd
man/findCells.Rd
man/findGene.Rd
man/findLouvain.Rd
man/findPath-SCD-method.Rd
man/findPath.Rd
man/geneDistribution.Rd
man/geneID2Name.Rd
man/geneName2id.Rd
man/getDiffMap-SCD-method.Rd
man/getDiffMap.Rd
man/getIsomap-SCD-method.Rd
man/getIsomap.Rd
man/getMST-SCD-method.Rd
man/getMST-reducedDim-method.Rd
man/getMST.Rd
man/getMVP.Rd
man/getPCA-SCD-method.Rd
man/getPCA.Rd
man/getPaths-reducedDim-method.Rd
man/getPaths.Rd
man/getTSNE-SCD-method.Rd
man/getTSNE.Rd
man/ggCol.Rd
man/heatmap.gottgens.Rd
man/heatmap.minus.Rd
man/initialize-SCD-method.Rd
man/listEnrichrDbs.Rd
man/loadings-PCA-method.Rd
man/logVarGenes.Rd
man/markFailedQC-SCD-method.Rd
man/markFailedQC.Rd
man/markGOI.Rd
man/memls.Rd
man/mst-SCD-method.Rd
man/mst-reducedDim-method.Rd
man/mst.Rd
man/multiGenes.Rd
man/neatLabels.Rd
man/newSCD.Rd
man/orderFrame.Rd
man/pData-SCD-method.Rd
man/performQC-SCD-method.Rd
man/performQC.Rd
man/plot-SCD-ANY-method.Rd
man/plot3-reducedDim-method.Rd
man/plot3.Rd
man/plotGene.Rd
man/plotGeneProfile.Rd
man/plotLegend.Rd
man/plotPath3-reducedDim-method.Rd
man/plotPath3.Rd
man/plotQC.Rd
man/plotTechVar.Rd
man/plotTree3.Rd
man/prepData.Rd
man/printEnrich.Rd
man/printGene.Rd
man/qc-SCD-method.Rd
man/qc.Rd
man/qcFunc.Rd
man/read.qPCR.Rd
man/reducedDim-class.Rd
man/removePath-SCD-method.Rd
man/removePath-reducedDim-method.Rd
man/removePath.Rd
man/resetCells.Rd
man/runPCA-SCD-method.Rd
man/runPCA.Rd
man/runTSNE-SCD-method.Rd
man/runTSNE.Rd
man/selectCells-SCD-method.Rd
man/selectCells.Rd
man/selectVariableGenes-SCD-method.Rd
man/selectVariableGenes.Rd
man/selectionTray.Rd
man/sf-SCD-method.Rd
man/sf-set-SCD-character-matrix-method.Rd
man/sf-set.Rd
man/sf.Rd
man/slidingAv.Rd
man/smoothGn.Rd
man/sparseMarkov.Rd
man/spikes-SCD-method.Rd
man/spikes.Rd
man/submap.Rd
man/techVar-SCD-method.Rd
man/techVar.Rd
man/techVarSub.Rd
man/useFilter-SCD-method.Rd
man/useFilter-set-SCD-logical-method.Rd
man/useFilter-set.Rd
man/useFilter.Rd
man/winsor.Rd
man/writeGeneList.Rd
