initialize-SCD-method: To initialize a SCD object

In wjawaid/bglab: Berthold Gottgens lab scRNA seq

Description

Initialise a SCD object

Usage

## S4 method for signature 'SCD'
initialize(.Object, experimentType, assayData, genoData,
  phenoData, spike = NULL, qc = NULL, ...)

Arguments

.Object	Single Cell Dataset object to be created
experimentType	Either "RNAseq" or "qPCR"
assayData	Annotated matrix of gene expression data
genoData	Annotated data frame of gene information. One column must match rownames in assayData the gene expression annotated matrix.
phenoData	Annotated data frame of phenotype information. One column must match the colnames in assayData the gene expression annotated matrix.
spike	Default NULL. Include spike-in data e.g. ERCC-92.
qc	Default NULL. Include quality control counts from HTseq for example.
...	Parameters passed to other Methods

Details

Initialise a SCD object

Value

Returns a newly initialised SCD object

Author(s)

Wajid Jawaid

wjawaid/bglab documentation built on May 4, 2019, 6:33 a.m.