submap: Subset Heatmap.
In wjawaid/bglab: Berthold Gottgens lab scRNA seq

Description Usage Arguments Details Value Author(s)

Generate heatmaps as subsets of a larger heatmap

1 2	submap(scd, retHeat, sTdev = dev.cur(), pdf = NULL, boxLwid = 3, boxCol = "black", data = NULL)

`scd`	Single Cell Dataset object.
`retHeat`	List returned from heatmap original heatmap.
`sTdev`	The display on which selectionTray is displayed
`pdf`	Filename to export pdf
`boxLwid`	Line width of box showing selection
`boxCol`	Colour of box line
`data`	If the data to heatmap was altered, enter the new data as a matrix.

Generate heatmaps as subsets of a larger heatmap. Call selectionTray before calling this function and select top. left and bottom right corners to chose selection.

Produces a heatmap to select points and then a submap.

Wajid Jawaid

wjawaid/bglab documentation built on May 4, 2019, 6:33 a.m.