newSCD: Make a new SCD object

In wjawaid/bglab: Berthold Gottgens lab scRNA seq

Description

Make new SCD object

Usage

newSCD(experimentType, assayData = NULL, genoData, phenoData, counts,
  spike = NULL, qc = NULL, ...)

Arguments

experimentType	Experiment Type. RNAseq or qPCR.
assayData	Matrix of data with genes in rows and cells in columns
genoData	Data frame of gene names with geneIds in rownames. Rownames must match rownames of assayData.
phenoData	Data frame of further details for each cell. Rownames must match column names of assayData.
counts	Raw counts data.
spike	Default NULL. Include spike-in data e.g. ERCC-92.
qc	Default NULL. Include quality control counts from HTseq for example.
...	Further parameters.

Details

Construct a new Single cell dataset object for the bglab package

Value

New Single Cell Dataset object.

Author(s)

Wajid Jawaid

wjawaid/bglab documentation built on May 4, 2019, 6:33 a.m.