plotGeneProfile: Plots gene profile on trajectory
In wjawaid/bglab: Berthold Gottgens lab scRNA seq

Description Usage Arguments Details Value Author(s)

Plots gene profile on trajectory

1
2
3

plotGeneProfile(scd, gene, reduceMethod = "diffMap", paths,
  pathlty = 1:length(paths), geneCol = 1:length(gene), winLength = 10,
  legendPos = "topright", tpos = 0, useGam = TRUE, ...)

`scd`	SCD object
`gene`	Character vector naming gene of interest
`reduceMethod`	Default "diffMap". Dimensionality reduction method.
`paths`	Vector of path names. Path names for which gene profiles are to be plotted
`pathlty`	Vector of line types for different paths. Give in same order as paths.
`geneCol`	Vector of colors. Give in same order as genes.
`winLength`	Integer. Window length to use for sliding average
`legendPos`	Character vector of length 1. Giving position of legend or optionally "none" if no legend is to be plotted.
`tpos`	Default 0. Position where to place the title.
`useGam`	Use GAM for smoothing
`...`	Additional parameter to pass to plot.