plot3: 3D plotting function
In wjawaid/bglab: Berthold Gottgens lab scRNA seq

Description Usage Arguments Details Value Author(s)

3D plotting function

plot3(object, colorBy = "", plotCols = NULL, legendSize = 1,
  legendOffset = 0.2, legPlac = 1:3, legPos = "front", negLeg = FALSE,
  plotLegend = TRUE, legVert = 1, legTextPos = 1, axLabs = "Component",
  doPath = FALSE, doTree = FALSE, selectedPath = NULL, useDims = 1:3,
  selectedCells = c(NA, NULL), legendTitle = "", diamWidth = 2,
  diamCol = "black", ...)

`object`	A Reduced Dimension object
`colorBy`	Character or numeric vector. Character vectors will be converted to a factor and cells coloured accordingly. Cell color can be supplied in the plotCols parameter. If not supplied the ggplots2 coloring scheme will be adopted.
`plotCols`	Colors to use for the plot
`legendSize`	Controls the size of the legend
`legendOffset`	Distance from the edge of the axis to place the legend as a proportion of the length of the axis.
`legPlac`	Controls the axis along which the legend is placed.
`legPos`	Controls the depth at which the legend is placed. Default is "front".
`negLeg`	Moves the legend to the other extreme of the axis
`plotLegend`	Logical value. Default is "True"
`legVert`	Controls the vertical orientation of the legend
`legTextPos`	Controls the position of the legend text
`axLabs`	Prefix with which to label the axes.
`doPath`	Logical value controlling whether the diameter path is plotted
`doTree`	Logical calue controlling whether the minimum spanning tree is plotted
`selectedPath`	The path to plot. Default is NULL and will plot the diameter path.
`useDims`	The dimensions of the the dimensionality reduced objects to use
`selectedCells`	The selected cells to plot
`legendTitle`	Legend title.
`diamWidth`	Width of diameter path line
`diamCol`	Color of diameter path line
`...`	Parameters to be passed to `plot3d` function.