selectCells: Select cells function

Description Usage Arguments Details Value Author(s)

Description

Used for selecting cells

Usage

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selectCells(object, reduceMethod, useDims = 1:3, mark = TRUE,
  returnInd = TRUE, label.cex = 0.3, pdf = NULL, ...)

Arguments

object

Single Cell Dataset object

reduceMethod

Dimensionality reduction method to choose. At the moment can be either "pca" or "diffMap"

useDims

Dimensions to be plotted

mark

Logical. Default "TRUE" marks the cells with names on the plot

returnInd

Logical. Default "FALSE" returns a numeric vector of named indices

label.cex

Default 0.3. Set for label size

pdf

Defaut is NULL. Else will generate a pdf.

...

Further parameters passed to the plot function

Details

Used for selecting cells. Generates plot and then allows user to choose cells. Cells are marked on the plot and are returned.

Value

Returns a plot with marked cells and a vector of either named indices or just names if "returnId" is set to "FALSE".

Author(s)

Wajid Jawaid


wjawaid/bglab documentation built on May 4, 2019, 6:33 a.m.