adj2rankadj | Convert network matrix to network rank matrix |
adjmatrix2edgelist | Convert network matrix to edge list |
anova2de | Use ANOVA to filter low epxressed genes |
average.consensus | Consensus network integrated from average edge ranks |
confusion | Statistical derivations of confusinon table |
cor2mi | Convert correlation matrix to MI matrix |
cor2statistics | Convert correlation to statistical significance measures. |
edgelist2adjmatrix | Convert edge list to network matrix |
firstPC | First order partial correlation |
fit.structure | Calculate structural fitness of networks |
gnwdata | Synthetic data sources simulated using GeneNetWeaver |
LowPC | Low order partial correlation |
node.degree | Calculate degree of nodes in gene networks |
plotAUC | Plot AUC curves |
random.net | Resort datasets and generate random networks |
RLowPC | Relevance low order partial correlation |
secondPC | Second order partial correlation |
shared.neighbour | Extract shared neihbour genes |
table.cut | Cut the confusion table at threshods |
table.evaluate | Evaluation of inferred gene networks |
zeroPC | Zero order partial correlation |
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