Description Usage Arguments Value Examples

View source: R/average.consensus.R

Consensus network is built from taking the average ranks of the edges in multiple network predictions.

1 | ```
average.consensus(adjmatrix.list, directed = F)
``` |

`adjmatrix.list` |
a list of inferred network matrices with same row and column ordering. |

`directed` |
logical. If TRUE, the network is considered as directed. If FALSE, the upper triangular part of the symmetric matrix is used to calculate the rank matrix |

`average.consensus`

returns a network with rank average edge ranks. The weights are rescaled to 0-1 and hihger values indicate higher ranks.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ```
##create two random networks
library(RLowPC)
set.seed(4)
net1<-abs(matrix(rnorm(16),4,4))
net1<-pmax(net1,t(net1))
diag(net1)<-0
set.seed(5)
net2<-abs(matrix(rnorm(16),4,4))
net2<-pmax(net2,t(net2))
diag(net2)<-0
dimnames(net1)<-dimnames(net2)<-list(letters[1:4],letters[1:4])
net.list<-list(net1=net1,net2=net2)
inf.consensus<-average.consensus(adjmatrix.list = net.list,directed = F)
adj2rankadj(net1)
adj2rankadj(net2)
inf.consensus
``` |

wyguo/RLowPC documentation built on May 28, 2017, 7:34 a.m.

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