Description Usage Arguments Value See Also
Analysis of variance is used to filter the low expressed genes. More details can be seen in aov
.
1 | anova2de(data.exp, ncol.idx, pval.cut = 0.05, model = "expression~time")
|
data.exp |
gene expression data matrix with variables in columns and samples in rows. The first columns are the indeces for comparison, such as time points and conditions for comparision. |
ncol.idx |
the number of index columns. |
pval.cut |
a numeric value for significance cut-off. The default is |
model |
the model used for comparison. The default is |
anova2de
returns a list includes the ANOVA p-value results, the names of differentially expressed genes and the time-series data of differential expressed genes.
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