edgelist2adjmatrix: Convert edge list to network matrix

In wyguo/RLowPC: Inference of co-expression gene network using relevance low order partial correlation from large scale expression data

Description

The function is to convert edge list to network matrix.

Usage

edgelist2adjmatrix(edgelist, genes, cutoff = 0, directed = F)

Arguments

edgelist	a data frame of edge list of a network, in which columns are regulators, targets and edge weights.
genes	gene names to name the rows and columns of the output network matrix.
cutoff	the threshold to cut the edge list.
directed	logical, to create directed or undirected (symmetric) network matrix.

Value

edgelist2adjmatrix returns a network matrix.

Examples

##load data
library(RLowPC)
data(gnwdata)
data.exp<-gnwdata$size100$ts1[,-c(1:3)]
genes<-colnames(data.exp)
ref.edge<-gnwdata$size100$net1
ref.edge[,3]<-1
ref.adj<-edgelist2adjmatrix(ref.edge,genes,directed=F)

wyguo/RLowPC documentation built on May 4, 2019, 12:04 p.m.