zeroPC: Zero order partial correlation

In wyguo/RLowPC: Inference of co-expression gene network using relevance low order partial correlation from large scale expression data

Description

The correlation and p-value of correlation.

Usage

zeroPC(data.exp, method = "pearson")

Arguments

data.exp	gene expression data.
method	"pearson", "spearman" or "kendall" method is used to calcuate the correlation values.

Value

zeroPC returns a data frame with columns of regulators, target genes, edge correlation weigthes, p-values, FRD and connection probability.

Examples

##load data
data(gnwdata)
##ts expression
data.exp<-gnwdata$size100$ts1[,-c(1:3)]
inf.zeroPC<-zeroPC(data.exp)
head(inf.zeroPC)
##refernece network

wyguo/RLowPC documentation built on May 4, 2019, 12:04 p.m.