ApplyMetaboFilter: Function to filter uploaded metabolomic data
In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.
ApplyMetaboFilter R Documentation
Function to filter uploaded metabolomic data
Description
.
Note, this is applied after abundance filter.
Usage
ApplyMetaboFilter(mbSetObj = NA, filter, rsd)
Arguments
mbSetObj
Input the name of the mbSetObj.
filtopt
Character, input the low variance filter option. "iqr" for
inter-quantile range, "sd" for standard deviation, and "cov" for coefficient of variation.
filtPerct
Numeric, input the percentage cutoff for low variance.
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| ApplyMetaboFilter | R Documentation |
Function to filter uploaded metabolomic data
Description
. Note, this is applied after abundance filter.
Usage
ApplyMetaboFilter(mbSetObj = NA, filter, rsd)
Arguments
mbSetObj |
Input the name of the mbSetObj. |
filtopt |
Character, input the low variance filter option. "iqr" for inter-quantile range, "sd" for standard deviation, and "cov" for coefficient of variation. |
filtPerct |
Numeric, input the percentage cutoff for low variance. |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.