PerformAlphaDiversityComp: Perform alpha diversity

View source: R/mdp_utils.R

PerformAlphaDiversityCompR Documentation

Perform alpha diversity

Description

This functions performs alpha diversity.

Usage

PerformAlphaDiversityComp(mbSetObj, opt, metadata)

Arguments

mbSetObj

Input the name of the mbSetObj.

opt

Character, input the name of the statistical method used to calculate the significance of the alpha diversity measure. "tt" for T-test or ANOVA, and "nonpar" for Mann-Whitney or Kruskall-Wallis.

metadata

Character, input the name of the experimental factor to group the samples.

Author(s)

Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)


xia-lab/MicrobiomeAnalystR documentation built on March 26, 2024, 1:20 p.m.