ApplyVarianceFilterMeta: Function to filter uploaded data
In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.
ApplyVarianceFilterMeta R Documentation
Function to filter uploaded data
Description
This function filters data based on low abundace or variance.
Note, this is applied after abundance filter.
Usage
ApplyVarianceFilterMeta(mbSetObj, dataName, filtopt, filtPerct)
Arguments
mbSetObj
Input the name of the mbSetObj.
dataName
Input the name of selected dataset data file
filtopt
Character, input the low variance filter option. "iqr" for
inter-quantile range, "sd" for standard deviation, and "cov" for coefficient of variation.
filtPerct
Numeric, input the percentage cutoff for low variance.
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.
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| ApplyVarianceFilterMeta | R Documentation |
Function to filter uploaded data
Description
This function filters data based on low abundace or variance. Note, this is applied after abundance filter.
Usage
ApplyVarianceFilterMeta(mbSetObj, dataName, filtopt, filtPerct)
Arguments
mbSetObj |
Input the name of the mbSetObj. |
dataName |
Input the name of selected dataset data file |
filtopt |
Character, input the low variance filter option. "iqr" for inter-quantile range, "sd" for standard deviation, and "cov" for coefficient of variation. |
filtPerct |
Numeric, input the percentage cutoff for low variance. |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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