CompareSummaryStats: Perform alpha diversity meta-analysis
In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.
CompareSummaryStats R Documentation
Perform alpha diversity meta-analysis
Description
Compute alpha diversity indices of datasets and plot summary figure, adapted from work of Jordan Bisanz
Usage
CompareSummaryStats(
mbSetObj = NA,
fileName = "abc",
sel.meta = "",
taxrank = "Family",
view.mode = "ratio",
format = "png",
dpi = 72
)
Arguments
mbSetObj
Input the name of the mbSetObj.
fileName
File name of output summary image
sel.meta
Selected metadata
taxrank
Selected taxonomy rank
view.mode
Type of plot to output (ratio or box)
format
File format of output image (default to png)
dpi
dots per inch resolution of image (default 72)
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.
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| CompareSummaryStats | R Documentation |
Perform alpha diversity meta-analysis
Description
Compute alpha diversity indices of datasets and plot summary figure, adapted from work of Jordan Bisanz
Usage
CompareSummaryStats(
mbSetObj = NA,
fileName = "abc",
sel.meta = "",
taxrank = "Family",
view.mode = "ratio",
format = "png",
dpi = 72
)
Arguments
mbSetObj |
Input the name of the mbSetObj. |
fileName |
File name of output summary image |
sel.meta |
Selected metadata |
taxrank |
Selected taxonomy rank |
view.mode |
Type of plot to output (ratio or box) |
format |
File format of output image (default to png) |
dpi |
dots per inch resolution of image (default 72) |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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