ApplyVarianceFilter: Function to filter uploaded data

Description Usage Arguments Author(s)

View source: R/general_proc.R

Description

This function filters data based on low abundace or variance. Note, this is applied after abundance filter.

Usage

1
ApplyVarianceFilter(mbSetObj, filtopt, filtPerct)

Arguments

mbSetObj

Input the name of the mbSetObj.

filtopt

Character, input the low variance filter option. "iqr" for inter-quantile range, "sd" for standard deviation, and "cov" for coefficient of variation.

filtPerct

Numeric, input the percentage cutoff for low variance.

Author(s)

Jeff Xia [email protected] McGill University, Canada License: GNU GPL (>= 2)


xia-lab/MicrobiomeAnalystR documentation built on Oct. 17, 2019, 9:05 a.m.