FeatureCorrelation | R Documentation |
This functions calculate correlation of all other feature to a given feature name. This is used in the Pattern Search analysis.
FeatureCorrelation(mbSetObj, dist.name, taxrank, feat)
mbSetObj |
Input the name of the mbSetObj. |
dist.name |
Input the distance measure. Input "pearson" for Pearson R, "spearman" for Spearman rank correlation, and "kendall" for Kendall rank correlation. |
taxrank |
Character, input the taxonomic level to use. |
taxa |
If the pattern is defined by using a specific taxon, input the name of that taxa here. |
variable |
Input the name of the experimental factor. |
datatype |
If the data is marker gene, input "16S". If the data is metagenomic, use "metageno". |
shotfeat |
Only valid for SDP module, set to "null". |
shotgunid |
Only valid for SDP module, set to "NA". |
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.