Regionfile_read: Internal Use Function That reads the bed file.

In xiaowangCN/GeneDMRs: GeneDMRs: an R package for Gene-based differentially methylated regions analysis

Internal Use Function That reads the bed file.

Description

This function reads the bed file and sort them.

Usage

Regionfile_read(bedfile, suffix)

Arguments

bedfile	refers to the bedfile name (e.g., refseq or cpgi) downloaded from UCSC, with the default refseq.
suffix	refers to the compressed file suffix such as ".gz", ".zip" and so on, with the default suffix ".gz".

Value

Outputs bed file that can be used in the next step.

Examples

regionfile <- Regionfile_read(bedfile, suffix)

xiaowangCN/GeneDMRs documentation built on Nov. 22, 2023, 11:19 p.m.