Pvalue_adjusted: Internal Use Function That adjusts the P values of logistical...
In xiaowangCN/GeneDMRs: GeneDMRs: an R package for Gene-based differentially methylated regions analysis
Pvalue_adjusted R Documentation
Internal Use Function
That adjusts the P values of logistical regression model.
Description
This function adjust the P values of each region or each cytosine by logistical regression model.
Usage
Pvalue_adjusted(output, adjustedmethod = "fdr")
Arguments
output
refers to the output of Methmean_match.
adjustedmethod
refers to the P values adjusted methods, with the default fdr.
The adjustedmethod could be "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "none" as well.
Value
Outputs the regiongene or regioncpg or of gene/cpg with different features with Q values.
Examples
output_Qvalue <- Pvalue_adjusted(output, adjustedmethod = "fdr")
output_Qvalue <- Pvalue_adjusted(output)
output_Qvalue <- Pvalue_adjusted(output, adjustedmethod = "bonferroni")
output_Qvalue <- Pvalue_adjusted(output, adjustedmethod = "BH")
xiaowangCN/GeneDMRs documentation built on Nov. 22, 2023, 11:19 p.m.
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| Pvalue_adjusted | R Documentation |
Internal Use Function That adjusts the P values of logistical regression model.
Description
This function adjust the P values of each region or each cytosine by logistical regression model.
Usage
Pvalue_adjusted(output, adjustedmethod = "fdr")
Arguments
output |
refers to the output of Methmean_match. |
adjustedmethod |
refers to the P values adjusted methods, with the default fdr. The adjustedmethod could be "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "none" as well. |
Value
Outputs the regiongene or regioncpg or of gene/cpg with different features with Q values.
Examples
output_Qvalue <- Pvalue_adjusted(output, adjustedmethod = "fdr")
output_Qvalue <- Pvalue_adjusted(output)
output_Qvalue <- Pvalue_adjusted(output, adjustedmethod = "bonferroni")
output_Qvalue <- Pvalue_adjusted(output, adjustedmethod = "BH")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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