Correlation_plot: Plot the methylation correlation.
In xiaowangCN/GeneDMRs: GeneDMRs: an R package for Gene-based differentially methylated regions analysis
View source: R/Correlation_plot.R
Correlation_plot R Documentation
Plot the methylation correlation.
Description
This function outputs the correlation plot for the methylation level of different samples or groups based on R package corrplot.
Usage
Correlation_plot(inputmethfile_QC, unmeth_exclude = TRUE)
Arguments
inputmethfile_QC
refers to the input file with methylation levels, with default inputmethfile after quality control.
unmeth_exclude
refers to whether to exclude the unmethylated sites or regions, with default TRUE.
Value
Outputs a correlation figure.
Examples
Correlation_plot(inputmethfile_QC)
Correlation_plot(siteall)
Correlation_plot(regiongenealls)
Correlation_plot(genefeatureall_cpgfeature)
Correlation_plot(genefeatureall_cpgfeature, unmeth_exclude = FALSE)
xiaowangCN/GeneDMRs documentation built on Nov. 22, 2023, 11:19 p.m.
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View source: R/Correlation_plot.R
| Correlation_plot | R Documentation |
Plot the methylation correlation.
Description
This function outputs the correlation plot for the methylation level of different samples or groups based on R package corrplot.
Usage
Correlation_plot(inputmethfile_QC, unmeth_exclude = TRUE)
Arguments
inputmethfile_QC |
refers to the input file with methylation levels, with default inputmethfile after quality control. |
unmeth_exclude |
refers to whether to exclude the unmethylated sites or regions, with default TRUE. |
Value
Outputs a correlation figure.
Examples
Correlation_plot(inputmethfile_QC)
Correlation_plot(siteall)
Correlation_plot(regiongenealls)
Correlation_plot(genefeatureall_cpgfeature)
Correlation_plot(genefeatureall_cpgfeature, unmeth_exclude = FALSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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