Group_boxplot: Boxplot the methylation levels for groups.

In xiaowangCN/GeneDMRs: GeneDMRs: an R package for Gene-based differentially methylated regions analysis

Boxplot the methylation levels for groups.

Description

This function outputs the methylation levels of all the groups in boxplot without considering other features.

Usage

Group_boxplot(regiongeneall, ttest = TRUE, title = "Group boxplot", col = NULL)

Arguments

regiongeneall	refers to the input file with group methylation levels.
ttest	refers to whether to perform the Student t-test, with default TRUE.
title	refers to the figure title, with default "Group boxplot among genes".
col	refers to the boxplot colors, with default NULL.

Value

Outputs boxplot figure with groups.

Examples

Group_boxplot(regiongeneall)
Group_boxplot(genebodypromoterall, title = "Three groups among genes in promoter region")
Group_boxplot(regiongeneall, ttest = FALSE, title = "Three groups among genes", col = c("red", "green", "blue"))

xiaowangCN/GeneDMRs documentation built on Nov. 22, 2023, 11:19 p.m.