Meth_difference: Internal Use Function That calculates the methylation...

In xiaowangCN/GeneDMRs: GeneDMRs: an R package for Gene-based differentially methylated regions analysis

Internal Use Function That calculates the methylation difference between groups.

Description

This function calculate the methylation difference between groups of each region or each cytosine.

Usage

Meth_difference(output, diffgroup = NULL)

Arguments

output	refers to the output of Methmean_match.
diffgroup	refers to methylation difference between two groups, with the default NULL that is the max group - min group. The two groups can be manually select like diffgroup = c("group1", "group2").

Value

Outputs methylation difference between groups.

Examples

output_methdiff <- Meth_difference(output)
adjustedoutput_methdiff <- Meth_difference(adjustedoutput, diffgroup = c("group1", "group2"))

xiaowangCN/GeneDMRs documentation built on Nov. 22, 2023, 11:19 p.m.