knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "man/figures/README-", out.width = "100%" )
The goal of RNAseqStat is a workflow for DEG analysis.
You can install the released version of RNAseqStat from CRAN with:
install.packages("RNAseqStat")
And the development version from GitHub with:
# install.packages("devtools") devtools::install_github("xiayh17/RNAseqStat")
This is a basic example which shows you how to solve a common problem:
library(RNAseqStat) ## basic example code
runAll
will run full workflow in default parameters.
This include 5 steps:
runAll(count_data = counts_input, group_list = group_list, test_group = "T", control_group = "C", OrgDb = 'org.Hs.eg.db', dir = results_dir)
Your can check more in xiayh17.top/rnaseqstat
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