NEWS.md

In xlucpu/MOVICS: Multi-Omics integration and VIsualization in Cancer Subtyping

MOVICS 0.99.5

• Minimal version of R was declined to 4.0.1.
• Two functions were added.
• Troubleshooting section was updated.

MOVICS 0.99.6

• Add an error notification prompt: current version of MOVICS can support up to 6 omics datasets and at least 2 datasets must be provided.
• Fix bugs when providing more than one binary matrix.
• Remove argument of is.binary in getIntNMF(), please use type instead.

MOVICS 0.99.7

• Fix bugs when setting argument of N.clust as 2 in getConsensusClustering().

MOVICS 0.99.8

• Fix bugs where argument of fig.path is useless in getSilhouette().

MOVICS 0.99.9

• Fix bugs in compTMB() if the maximum number of x-axis is less than 3.

MOVICS 0.99.10

• Fix bugs in compAgree() if argument of subt2comp has more than 2 variables.
• Move heatmap legend and annotation legend to the left in runMarker() and runGSVA(), and return the complexheatmap object for further modification if necessary.

MOVICS 0.99.11

• Fix bugs in compFGA() that poses error when only 2 subtypes were identified.

MOVICS 0.99.12

• Correct help document of drugs argument in compDrugsen().

MOVICS 0.99.13

• Fix bug in compClinvar() if the column clust stored in moic.res$clust is not located in the second.

MOVICS 0.99.14

• Solve the issue where R package of SNFtool was no longer stored by CRAN repository (https://cran.r-project.org/web/packages/SNFtool/index.html).

MOVICS 0.99.15

• Since error occurs when I use the GitHub version of ComplexHeatmap to concatenate heatmaps, I replace the requirement for this package by using its Bioconductor version.
• R package of SNFtool has been removed from the CRAN repository, I replaced this by using GitHub version (https://github.com/maxconway/SNFtool).

MOVICS 0.99.16

• Fix bug in runMarker() if argument of doPlot was set as FALSE.

MOVICS 0.99.17

• Fix bug in installing MOVICS regarding the latest version of ggpmisc. The dependency ggpmisc was replaced by ggpp for using geom_table().
• Modify compSurv() and by default the survival curve will present the entire survival time range instead of 10-year cutoff unless specified by the user.

xlucpu/MOVICS documentation built on July 24, 2021, 9:23 p.m.