Files in xlucpu/MOVICS
Multi-Omics integration and VIsualization in Cancer Subtyping
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
MOVICS.Rproj
MOVICS.pdf
NAMESPACE
NEWS.md
R/LRAcluster.R
R/compAgree.R
R/compClinvar.R
R/compDrugsen.R
R/compFGA.R
R/compMut.R
R/compSurv.R
R/compTMB.R
R/dataset.R
R/getCIMLR.R
R/getCOCA.R
R/getClustNum.R
R/getConsensusClustering.R
R/getConsensusMOIC.R
R/getElites.R
R/getIntNMF.R
R/getLRAcluster.R
R/getMOIC.R
R/getMoCluster.R
R/getMoHeatmap.R
R/getNEMO.R
R/getPINSPlus.R
R/getSNF.R
R/getSilhouette.R
R/getStdiz.R
R/getiClusterBayes.R
R/global.R
R/pRRophetic.R
R/quiet.R
R/runDEA.R
R/runGSEA.R
R/runGSVA.R
R/runKappa.R
R/runMarker.R
R/runNTP.R
R/runPAM.R
README.md
data/PANCANCER_IC_Tue_Aug_9_15_28_57_2016.RData
data/cgp2016ExprRma.RData
docs/MOVICS-VIGNETTE.html
inst/doc/MOVICS-VIGNETTE.R
inst/doc/MOVICS-VIGNETTE.Rmd
inst/doc/MOVICS-VIGNETTE.html
inst/extdata/brca.tcga.RData
inst/extdata/brca.yau.RData
inst/extdata/c5.bp.v7.1.symbols.xls
inst/extdata/gene sets of interest.gmt
man/LRAcluster.Rd
man/affinityMatrix.Rd
man/calcPhenotype.Rd
man/cgp2016ExprRma.Rd
man/classifySamples.Rd
man/compAgree.Rd
man/compClinvar.Rd
man/compDrugsen.Rd
man/compFGA.Rd
man/compMut.Rd
man/compSurv.Rd
man/compTMB.Rd
man/dist2.Rd
man/doVariableSelection.Rd
man/drugData2016.Rd
man/estimateCI.pRRopheticCv.Rd
man/estimateMeanPredictionError.pRRopheticCv.Rd
man/estimateMedianPredictionError.pRRopheticCv.Rd
man/estimateRsqr.pRRopheticCv.Rd
man/getCGPinfo.Rd
man/getCIMLR.Rd
man/getCOCA.Rd
man/getClustNum.Rd
man/getConsensusClustering.Rd
man/getConsensusMOIC.Rd
man/getElites.Rd
man/getIntNMF.Rd
man/getLRAcluster.Rd
man/getMOIC.Rd
man/getMoCluster.Rd
man/getMoHeatmap.Rd
man/getNEMO.Rd
man/getPINSPlus.Rd
man/getPPV.Rd
man/getSNF.Rd
man/getSilhouette.Rd
man/getStdiz.Rd
man/getiClusterBayes.Rd
man/homogenizeData.Rd
man/nemo.affinity.graph.Rd
man/nemo.clustering.Rd
man/nemo.num.clusters.Rd
man/pRRopheticCV.Rd
man/pRRopheticLogisticPredict.Rd
man/pRRopheticPredict.Rd
man/pRRopheticQQplot.Rd
man/plot.pRRopheticCv.Rd
man/predictionAccuracyByCv.Rd
man/quiet.Rd
man/runDEA.Rd
man/runGSEA.Rd
man/runGSVA.Rd
man/runKappa.Rd
man/runMarker.Rd
man/runNTP.Rd
man/runPAM.Rd
man/spectralClustering.Rd
man/summarizeGenesByMean.Rd
man/summary.pRRopheticCv.Rd
man/twoclassdeseq2.Rd
man/twoclassedger.Rd
man/twoclasslimma.Rd
tests/testthat.R
tests/testthat/optimal_number_cluster.pdf
tests/testthat/testthat.R
vignettes/.gitignore
vignettes/MOVICS-VIGNETTE.Rmd
vignettes/pkg_cloud.jpg
vignettes/pkg_pipeline.jpg
