add_program_score: Add gene program scores

In xmc811/Scillus: Seurat wrapper package enhancing the processing and visualization of single cell data

Description

Add gene program scores

Usage

add_program_score(dataset, features, org = "human", nbin = 20, ctrl = 10, name)

Arguments

dataset	A Seurat object.
features	An string vector - a gene list of expression programs.
org	A string - name of organism. Currently only "human" or "mouse" are accepted.
nbin	An integer - number of bins of aggregate expression levels for all analyzed features
ctrl	An integer - number of control features selected from the same bin per analyzed feature
name	A string - name of the expression program

Value

A Seurat object.

xmc811/Scillus documentation built on April 26, 2021, 1:41 a.m.