find_diff_genes: Find differential expressed genes between two groups in each...

In xmc811/Scillus: Seurat wrapper package enhancing the processing and visualization of single cell data

Description

Find differential expressed genes between two groups in each cluster

Usage

find_diff_genes(dataset, clusters, comparison, ...)

Arguments

dataset	A Seurat object.
clusters	A character vector - clusters to investigate.
comparison	A character vector of length 3 - the first element is the variable name, the second one is the level of the baseline group, the third one is the level to be compared with the baseline. For example, c("condition","untreated","treated") will generate the results of "treated" group vs "untreated" group in the "condition" variable.
...	Additional parameters to be passed to Seurat::FindMarkes.

Value

A dataframe.

xmc811/Scillus documentation built on April 26, 2021, 1:41 a.m.