plot_cluster_go: plot the GO enrichment analysis of a cluster
In xmc811/Scillus: Seurat wrapper package enhancing the processing and visualization of single cell data
Description
Usage
Arguments
Value
Description
plot the GO enrichment analysis of a cluster
Usage
1
plot_cluster_go(markers, cluster_name, topn = 100, org, ...)
Arguments
markers
A dataframe - the dataframe generated by FindAllMarkers function in Seurat.
cluster_name
A string - the name of the single cell cluster.
topn
An integer - the number of top gene markers in each cluster for the GO enrichment test.
org
A string - the organism that the genes belong to. Can take values from c("human","mouse").
...
Additional arguments to be passed to the function enrichGO.
Value
A plot.
xmc811/Scillus documentation built on April 26, 2021, 1:41 a.m.
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Description Usage Arguments Value
Description
plot the GO enrichment analysis of a cluster
Usage
1 | plot_cluster_go(markers, cluster_name, topn = 100, org, ...)
|
Arguments
markers |
A dataframe - the dataframe generated by |
cluster_name |
A string - the name of the single cell cluster. |
topn |
An integer - the number of top gene markers in each cluster for the GO enrichment test. |
org |
A string - the organism that the genes belong to. Can take values from |
... |
Additional arguments to be passed to the function |
Value
A plot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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