plot_scdata: Single cell visualization - merged and colored by biological...

In xmc811/Scillus: Seurat wrapper package enhancing the processing and visualization of single cell data

Description

Single cell visualization - merged and colored by biological sample

Usage

plot_scdata(
  dataset,
  color_by = "seurat_clusters",
  split_by = NA,
  pal_setup = "Set2"
)

Arguments

dataset	A Seurat object.
color_by	A string - by which metadata variable the colors will be applied.
split_by	A string - the splitting variable in the metadata.
pal_setup	A dataframe with 2 columns - the RColorBrewer palette setup to be used; Or a character vector of RColorBrewer palettes. Multiple palettes can be specified, in case of many levels to be colored; Or a character vector of colors.

Value

A plot.

xmc811/Scillus documentation built on April 26, 2021, 1:41 a.m.