plot_GSEA: plot the results of GSEA

In xmc811/Scillus: Seurat wrapper package enhancing the processing and visualization of single cell data

Description

plot the results of GSEA

Usage

plot_GSEA(
  gsea_res,
  pattern = "HALLMARK_",
  p_cutoff = 0.05,
  colors = c("#0570b0", "grey", "#d7301f")
)

Arguments

gsea_res	A dataframe - the results of GSEA generated by test_GSEA.
pattern	A string - the prefix string pattern to be trimmed of pathway names.
p_cutoff	A numeric value - the p-value cutoff for significance.
colors	A character vector - three color values, corresponding to the low, mid, and high of the color gradient.

Value

A plot.

xmc811/Scillus documentation built on April 26, 2021, 1:41 a.m.