checkMiRNAAlive: Check the miRNA status(Alive or Dead)

Description Usage Arguments Value Author(s) Examples

View source: R/miRBaseConvert.R

Description

This function checks the miRNA status (Alive or Dead) in the latest miRBase verison.

Usage

1
checkMiRNAAlive(Accessions, verbose = TRUE)

Arguments

Accessions

A character vector representing the miRNA Accessions in miRBase.

verbose

Logical value. If true, the dead miRNAs will be printed the console.

Value

A character vector of Accessions for all alive miRNAs. The names of the return vector are the position indexes in the input Accessions.

Author(s)

Xu, Taosheng [email protected]

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
data(miRNATest)
## The input is miRNA Accessions
Accessions=miRNATest$Accession
alive_Accession1=checkMiRNAAlive(Accessions)

##The input is miRNA names
miRNANames=miRNATest$miRNA_Name
version=checkMiRNAVersion(miRNANames,verbose = TRUE)
result=miRNA_NameToAccession(miRNANames,version = version)
Accessions=result$Accession
alive_Accession2=checkMiRNAAlive(Accessions)

xtsvm/miRBaseConverter documentation built on May 20, 2019, 5:08 p.m.