miRNA_NameToAccession: The miRBase miRNA names with specified version to Accessions

In xtsvm/miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Description

This function converts a group of any species' miRNA name to the Accessions defined in miRBase.

Usage

miRNA_NameToAccession(miRNANames, version = "v21")

Arguments

miRNANames	A character vector representing the source miRNA names needed to be convert.
version	A character value representing the version corresponding the miRNANames. Users can apply the function getAllVersionInfo() to get the available miRNA version names. The optional values are in below: "v6","v7_1","v8","v8_1","v8_2","v9","v9_1","v9_2","v10","v10_1","v11","v12","v13","v14", "v15","v16","v17","v18","v19","v20","v21"

Value

A nx2 data frame. The number of rows equal to the input miRNA names. The two columns are defined as below:

• miRNAName_{Version} : The input miRNA names (Column 1).
  

• Accession : The convert Accession(Column 2).
  

Author(s)

Xu, Taosheng [e-mail]

Examples

data(miRNATest)
miRNANames=miRNATest$miRNA_Name
version=checkMiRNAVersion(miRNANames,verbose=TRUE)
result1=miRNA_NameToAccession(miRNANames,version=version)
result2=miRNA_AccessionToName(result1[,2],targetVersion="v21")
result3=miRNAVersionConvert(miRNANames,targetVersion="v21",exact=TRUE)

xtsvm/miRBaseConverter documentation built on May 20, 2019, 5:08 p.m.