miRNA_AccessionToName: miRBase Accession to miRNA Name in specified version

In xtsvm/miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Description

This function converts a group of any species' miRNA Accessions (including precursor and mature miRNA) to a specified miRBase version if the Accessions have been defined in miRBase.

Usage

miRNA_AccessionToName(Accessions, targetVersion = "v21")

Arguments

Accessions	A character vector representing the miRNA Accessions needed to be convert.
targetVersion	A character value representing the target miRBase version corresponding the Accessions. The optional values are in below: "v6","v7_1","v8","v8_1","v8_2","v9","v9_1", "v9_2","v10","v10_1","v11","v12","v13","v14", "v15","v16","v17","v18","v19","v20","v21"

Value

A nx2 data frame. The number of rows equal to the input miRNA names. The two columns are defined as below:

• Accession : The Accession of miRNAs (Column 1).
  

• TargetName : The converted miRBase names (in specified version) corresponding to the Accessions (Column 2).
  

Author(s)

Xu, Taosheng [e-mail]

Examples

data(miRNATest)
Accessions=miRNATest$Accession
result1=miRNA_AccessionToName(Accessions,targetVersion="v13")
result2=miRNA_AccessionToName(Accessions,targetVersion="v21")

xtsvm/miRBaseConverter documentation built on May 20, 2019, 5:08 p.m.