getAllMiRNAs: Get all miRNAs in the specified miRBase version

In xtsvm/miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Description

This function gets all miRNAs in the specified miRBase version.

Usage

getAllMiRNAs(version = "v21", type = "all", species = "all")

Arguments

version	A character value representing the specified miRBase version for retrieval. Users can apply the function getAllVersionInfo() to get the available miRNA version names. The optional values are in below: "v6","v7_1","v8","v8_1","v8_2","v9","v9_1", "v9_2","v10","v10_1","v11","v12","v13","v14", "v15","v16","v17","v18","v19","v20","v21"
type	A character value representing the miRNA type for retrieval. "precursor" "mature" "all" : precursor and mature
species	A character value representing the abbreviation of species. Users can apply the getAllSpecies() function to get the available abbreviation of species. If species is set to "all", the miRNAs of all species will return.

Value

A data frame with three columns. The three columns are defined as below:

• Accession
  

• Name
  

• Sequence
  

Author(s)

Xu, Taosheng [e-mail]

Examples

miRNAs=getAllMiRNAs(version="v21", type="all", species="hsa")

xtsvm/miRBaseConverter documentation built on May 20, 2019, 5:08 p.m.