CalculateAdj: Calculate adjacency matrix from an annotation file.

In xueweic/APGD: TGPred: Efficient methods for predicting target genes of a transcription factor by integrating statistics, machine learning, and optimization.

Calculate adjacency matrix from an annotation file.

Usage

CalculateAdj(Annotation)

Arguments

Annotation

n_genes*n_pathways dimensional matrix that indicates the annotation of genes within pathways information.

Value

Adj	the adjacency matrix of network structure.

Examples

    Annotation <- matrix(c(1,1,0,0,0,0,1,1), nrow = 4, ncol = 2)
    Annotation <- data.matrix(Annotation)
    CalculateAdj(Annotation)

xueweic/APGD documentation built on Sept. 4, 2023, 2:18 a.m.