Sample_data: Sample data for analysis

In xueweic/APGD: TGPred: Efficient methods for predicting target genes of a transcription factor by integrating statistics, machine learning, and optimization.

Sample data for analysis

Description

Sample datasets for analysis using HuberNet and Net(TF, PWG, Annotation); Sample datasets for analysis using HuberLasso, Lasso, HuberENET, and ENET (TF, PWG).

Usage

APGD::Sample_data

Arguments

TF	Expression level for one TF with 50 sample size.
PWG	Expression levels for 131 PWGs with 50 sample size.
Annotation	Annotation file for 131 PWGs, which are included in 5 Pathways. (Only for HuberNet and Net methods)

Format

Datasets with 3 dataframes, which are:

Examples

Sample_data <- APGD::Sample_data

X <- Sample_data$PWG

y <- Sample_data$TF

Annotation <- Sample_data$Annotation

xueweic/APGD documentation built on Sept. 4, 2023, 2:18 a.m.