API for yangjl/farmeR
Generate pipelines for maize Genomic and Genetic analysis

Global functions
GS_cv_inp	Source code
GS_regular_inp	Source code
bsalign	Source code
chrline_tick	Source code
diag	Source code
get_file2tab	Man page Source code
get_gff_features	Source code
get_qc	Source code
get_runinfo	Man page Source code
hello	Man page
makeTransparent	Source code
panel.cor	Source code
plot_mht	Man page Source code
plot_stack	Man page Source code
rescale	Source code
run_ANGSD	Man page Source code
run_GATK	Man page Source code
run_GATK_JointGenotype	Man page Source code
run_GenSel4	Man page Source code
run_Rcodes	Man page Source code
run_alphaimpute	Man page Source code
run_aspera	Man page Source code
run_bismark	Man page Source code
run_bs2vcf	Man page Source code
run_bwamem	Man page Source code
run_cutadapt	Man page Source code
run_fastCall	Man page Source code
run_fastq_qc	Man page Source code
run_fermikit	Man page Source code
run_fermikit_vcfcall	Man page Source code
run_fq_dump	Man page Source code
run_fq_dump2	Man page Source code
run_gerpIBD	Man page Source code
run_iput	Man page Source code
runa_bsmap	Man page Source code
set_GS	Source code
set_VQSR	Source code
set_addRG	Source code
set_alphaimpute	Man page Source code
set_angsd_gl	Source code
set_angsd_indF	Source code
set_angsd_theta	Source code
set_array_job	Man page Source code
set_bwa	Source code
set_farm_job	Man page Source code
set_hardfilter	Man page Source code
set_jointgenotype	Source code
set_jupyter	Man page Source code
set_markDup	Source code
set_realignInDels	Source code
set_recalBases	Source code
set_trim_PE	Source code
vcaller	Source code