Description Usage Arguments Details Value Examples
angsd
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r |
Chr regions. |
email |
Your email address that farm will email to once the jobs were done/failed. |
runinfo |
Parameters specify the array job partition information.
A vector of c(FALSE, "bigmemh", "1"): 1) run or not, default=FALSE
2) -p partition name, default=bigmemh and 3) –cpus, default=1.
It will pass to |
inputdf |
An input data.frame. |
minQ |
Minimum base quality score. |
minMapQ |
[int]=0 Minimum mapQ quality. |
see more detail about ANGSD http://popgen.dk/angsd/index.php/Main_Page
Scripts learned from Tim's paper https://github.com/timbeissinger/Maize-Teo-Scripts
return a batch of shell scripts.
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