Description Usage Arguments Value Examples
manhattan plot
1 2 |
inputdf |
An input data.frame, with columns of file and out. |
outdir |
The dir of shell files. |
cmdno |
Number of commands to excute in each array. |
rcodes |
The abosulte path of your R codes to run. |
arrayshid |
The sbatch id. |
email |
Your email address that farm will email to once the jobs were done/failed. |
cmdno |
Number of commands per CPU, i.e. number of rows per inputdf. |
runinfo |
Parameters specify the array job partition information.
A vector of c(FALSE, "bigmemh", "1"): 1) run or not, default=FALSE
2) -p partition name, default=bigmemh and 3) –cpus, default=1.
It will pass to |
return a batch of shell scripts.
1 2 3 | run_Rcodes(inputdf=data.frame(file=1:11, out=10), outdir="slurm-script", cmdno=10,
rcodes = "lib/C_format.R", arrayshid = "slurm-script/run_rcode_array.sh",
email=NULL, runinfo = c(FALSE, "bigmemh", 1))
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