Files in yangjl/farmeR
Generate pipelines for maize Genomic and Genetic analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/get_file2tab.R
R/plot_cor.R
R/plot_mht.R
R/plot_stack.R
R/run_ANGSD.R
R/run_GATK.R
R/run_GATK_JointGenotype.R
R/run_GenSel4.R
R/run_Rcodes.R
R/run_alphaImpute.R
R/run_aspera.R
R/run_bismark.R
R/run_bs2VCF.R
R/run_bsmap.R
R/run_bwamem.R
R/run_cutadapt.R
R/run_fastCall.R
R/run_fastq_qc.R
R/run_fermikit.R
R/run_fq_dump.R
R/run_gerpIBD.R
R/run_icmd.R
R/set_arrayjob2.R
R/set_jupyter.R
R/utils.R
R/utils_maize.R
README.md
farmeR.Rproj
man/get_file2tab.Rd
man/hello.Rd
man/plot_mht.Rd
man/plot_stack.Rd
man/run_ANGSD.Rd
man/run_GATK.Rd
man/run_GATK_JointGenotype.Rd
man/run_GenSel4.Rd
man/run_Rcodes.Rd
man/run_alphaimpute.Rd
man/run_aspera.Rd
man/run_bismark.Rd
man/run_bs2vcf.Rd
man/run_bwamem.Rd
man/run_cutadapt.Rd
man/run_fastCall.Rd
man/run_fastq_qc.Rd
man/run_fermikit.Rd
man/run_fq_dump.Rd
man/run_gerpIBD.Rd
man/run_iput.Rd
man/runa_bsmap.Rd
man/set_array_job.Rd
man/set_farm_job.Rd
man/set_jupyter.Rd
vignettes/maizeR-vignette.Rmd
