transcriptome: Transcriptomic data set that is used in the toy example...

In yigbt/multiGSEA: Combining GSEA-based pathway enrichment with multi omics data integration

Transcriptomic data set that is used in the toy example provided by the 'multiGSEA' package.

Description

Processed transcriptomics data set that will be used throughout the vignette provided by the 'multiGSEA' package. The raw data was originally published by [Quiros _et al._](http://doi.org/10.1083/jcb.201702058) and deposited at [NCBI Geo](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84631).

Usage

data(transcriptome)

Format

A tibble with 4 variables and 15174 measured transcriptome features:

Symbol

HGNC symbol of measured transcripts.

logFC

Log2-transformed fold change between treatment and control.

pValue

P-value associated with the fold change.

adj.pValue

Adjusted p-value associated with the fold change.

Examples

data(transcriptome)

yigbt/multiGSEA documentation built on April 28, 2023, 10:02 p.m.