getOrganisms: Get list of supported organisms
In yigbt/multiGSEA: Combining GSEA-based pathway enrichment with multi omics data integration
View source: R/feature_processing.R
getOrganisms R Documentation
Get list of supported organisms
Description
Get a list of organisms that are covered in our workflow through a supporting
'AnnotationDBi' package. Without such a package we would not be able to map
transcript and protein identifier between different formats. All the
organisms that are listed here have at lest kegg and or reactome pathway
annotation that can be queried by 'graphite'.
Usage
getOrganisms()
Value
List of supported organisms
Examples
getOrganisms()
yigbt/multiGSEA documentation built on April 28, 2023, 10:02 p.m.
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View source: R/feature_processing.R
| getOrganisms | R Documentation |
Get list of supported organisms
Description
Get a list of organisms that are covered in our workflow through a supporting 'AnnotationDBi' package. Without such a package we would not be able to map transcript and protein identifier between different formats. All the organisms that are listed here have at lest kegg and or reactome pathway annotation that can be queried by 'graphite'.
Usage
getOrganisms()
Value
List of supported organisms
Examples
getOrganisms()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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