getMappedFeatures: Wrapper to get feature mappings.

View source: R/feature_processing.R

getMappedFeaturesR Documentation

Wrapper to get feature mappings.

Description

Feature mappings will be used from hard disk in case they have been mapped before and 'useLocal' is not set to be FALSE. In other cases, a feature extraction will be done and the results are stored for a following occasion.

Usage

getMappedFeatures(
  pathways,
  returnID = "SYMBOL",
  organism = "hsapiens",
  which = "proteins",
  useLocal = TRUE
)

Arguments

pathways

List of pathway definitions.

returnID

String specifying the returned ID format.

organism

String defining the organism of analysis.

which

Mode to extract the features, either \'proteins\' or \'metabolites\'.

useLocal

Boolean specifying whether or not to use the local preprocessed mapping.

Value

List of mapped features for an omics layer.


yigbt/multiGSEA documentation built on May 5, 2022, 1:01 p.m.