mapIDType: Helper function to map only a subset of metabolite IDs

In yigbt/multiGSEA: Combining GSEA-based pathway enrichment with multi omics data integration

Helper function to map only a subset of metabolite IDs

Description

This helper function becomes necessary since there are sometimes multiple ID formats used in a single pathway definition.

Usage

mapIDType(features, keytype = "CHEBI", maptype = "ChEBI", returntype = "HMDB")

Arguments

features	List of metabolite feature IDs of the pathway.
keytype	String specifying the ID format in pathway definition.
maptype	String specifying the corresponding ID format in multiGSEA.
returntype	String identifying the ID type that should be mapped.

Value

List of mapped metabolite IDs.

yigbt/multiGSEA documentation built on April 28, 2023, 10:02 p.m.